Function reference • phdcocktail

Recode

Transform collected raw data into a publication-ready format

recode_vrs(): Recode variables and their values based on a data dictionary

Plot

Generate insightful visualizations from clinical data

plot_bars(): Plot % of outcomes as bars

Report

Report summary statistics in a publication-ready format

report_quantiles(): Report median-quantiles summaries

print(<quantiles_report>): A custom print method for the 'quantiles_report' class

Transport

Transfer data between R session and the output folder

get_safe_file_name(): Get a safe name to export a file without overwriting

get_safe_workspace_name(): Get a safe name to save current workspace without overwriting

identify_recent_workspace(): Identify the most recent saved R workspace

start_fresh(): Restart R session

Data

Datasets included in the package

ibd_data_dict: Data dictionary for Inflammatory Bowel Disease (IBD) data

ibd_data1 ibd_data2: Inflammatory Bowel Disease (IBD) datasets

ibd_outcomes: Inflammatory Bowel Disease (IBD) outcomes